NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209378_1016222

Scaffold Ga0209378_1016222


Overview

Basic Information
Taxon OID3300026528 Open in IMG/M
Scaffold IDGa0209378_1016222 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4289
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058886Metagenome134Y
F090216Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0209378_10162223F090216N/AMAYKSTLGVFRGTFQIPLSSEVGPWVATVEVSSFDDGYGNKGPISSVLKPFTVSPAIFTVSATTNYNNYTIGGIVVIYASVVTPGGYNFTSGTVTATTYHSSSQIGSPLLLFYDQSRAKWVGSYTVNSTNPYGIWQIQVNASDSYGNMGQGSTSTLVSVPAAPPEQSSTFNYILVVLAVLGGLAMLVAWMVFGRRRVLRRVLKVDLEAIHAEAKKVENQDFFKKVQEQLKQQKSESEQSKHSG
Ga0209378_10162224F058886AGGVDCYARREKRIGWDSFQHREYVLLSLLSLFLFVTTFNTPVHAVGETYTLTESAPRLQESSTASVLLILNVSNANAIANYAFTWNVKDPSGSIHQATNATNVPHAASFVESVVYPGKFSSSPSLAYTGVYAVWVNQTQPLLVGSTGVANGQFQVGLTDSLSYPRTFPVGVKASGYAPNLNVTIMVSGSGGPTLGFPLNKLADSNGDLSYVWPSIPASTPLATTR
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Institute for Fundamental Biomedical Research
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