 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026529 Open in IMG/M |
| Scaffold ID | Ga0209806_1000023 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 77996 |
| Total Scaffold Genes | 77 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 53 (68.83%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California: Angelo Coastal Reserve | |||||||
| Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001047 | Metagenome / Metatranscriptome | 793 | Y |
| F001940 | Metagenome / Metatranscriptome | 614 | Y |
| F012209 | Metagenome / Metatranscriptome | 282 | Y |
| F013075 | Metagenome | 274 | Y |
| F017113 | Metagenome / Metatranscriptome | 242 | Y |
| F026836 | Metagenome / Metatranscriptome | 196 | Y |
| F033386 | Metagenome / Metatranscriptome | 177 | N |
| F035243 | Metagenome | 172 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209806_10000231 | F035243 | GAGG | LEPPISVVGGAKADLLRLVLDGVLILVLVACIVWMVRFNISQQKGERSTLKWRDMDPIRKTVAGLISVWICLNLYLSVGNELANLNVVVLPLGSIYSFYGPILVWASASSIVGLALLLSIRFPRRPVIA |
| Ga0209806_100002325 | F012209 | N/A | MTENQKPQPRLDLGLADPKSLATMVDASLKRGSSLSFALSDATVGVNLDNLGDWTITVGLSSRSDRFHQITSSLERLGFFQAAENEGTNYMLWTSILSGVGNDRIIAEQTLLLALKVLQSPGVPVYIM |
| Ga0209806_100002334 | F001940 | AGAAGG | MSAKSMKTALKGTSIEEKDAKEIISGVQAMYEKVPGFIRPMLPSLPDILKRIPSSAGKYTLNEIIQLLDWAYESGQLKK |
| Ga0209806_100002340 | F033386 | N/A | MFIFEEPRANPLRSLGVQLAKFMLSLRDESFELLQTEAEDRGISIQELIRAVIIPDWVKLNSVAKPAFETGNNGLRAYRSTPPGRDQEQMFQPAMSRIR |
| Ga0209806_100002351 | F001047 | N/A | MRETVFDESYNVREVLDDVIERVALREKLLGTAKQFAEKKREEKFTLAIRQFEGLMVDFLRLYQPILERLRSYREAMQKEITSLRSSLATVNGMLEVSKGIEGLAPRVQQLEADGQELEGRINEKMKMANKIDDLFNRIRPFQTGSQGQMGRDSLSDVLSGMPKDLFPDTPEPAKEVTRKAGSR |
| Ga0209806_100002354 | F013075 | GGAG | LPREFLPRAHSRRLGELDASNWKTLEVGRNASRIDPAIREIVSSLNSKGYRTFSSCSGGHRANLRRRFDRHESGYIAFSPPSRIPFTLYLALRGRNHDFMFEAEAVIHDGNGDRRETVYTQLDWQLVDQNTHRREYYEKLFIEMKRIIERFPGQPADQKEFLTGLLGKPRLRLGSRIVSGQMKRFTR |
| Ga0209806_100002358 | F026836 | GGAGG | LPQQPRSIRRLALGIFSIALGIVSLIAFFSVTYIAGIGFLGGFYGFILIALGVGLILPKKERTNEEIQ |
| Ga0209806_100002377 | F017113 | AGGCGG | MSLSLRVEGGNSCHVTGLNGDKGLVGHCKILAWQWAKLPRYYWRE |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |