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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026529 Open in IMG/M |
| Scaffold ID | Ga0209806_1000156 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 41777 |
| Total Scaffold Genes | 44 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (47.73%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California: Angelo Coastal Reserve | |||||||
| Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011480 | Metagenome | 290 | Y |
| F020149 | Metagenome | 225 | N |
| F023820 | Metagenome | 208 | Y |
| F028467 | Metagenome | 191 | Y |
| F074651 | Metagenome / Metatranscriptome | 119 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209806_100015610 | F020149 | N/A | MLLILASTSRILPRNTQVGLVTIALSATLTLVVSLIGVPIGFTFMYFFGGVISTKAIKLYLFITKGTHVIGSKTSELSTVQASQGLKLRLRRQVMYFGFILAVVVPFATYEANHKDLPLISPLARTTDIVSLITQDFVTLTMTASLMLPLVALALPYFGGLRLRSIDVGPFHTTVLSTVIGASGGFSLLYTALARPIFSTLAYIFLLLIGVCWCFALGCNLAADPANRHIARTVLTEKVSSRVVSSKIWLENPPGKFREV |
| Ga0209806_10001564 | F074651 | N/A | MQVLDRAVYLRLKQLAIQRGVTVQELIRVLLIPDWLHGAEERRLKSELESRHRRSTQKRLFRTSLQKPLVSARRN |
| Ga0209806_100015642 | F028467 | AGAAG | VSSPDLEAQTTPRIKDALNAAIQRTGEEEFASLSGIETSVLERILQNEGEYVPVAIVTLACQVNRSHNDPEPARSSISECLKGAILRLPQKGNYGNTTEPGESSTRRLQRARSFKVQNRAGRIYDPAALRIAGFSVNLFTFLVLGYFLGGIVLGPLFGVGSCVGVVAAPPWITPCAGSGIGLVFGSVIGLAYTYYYFVKKL |
| Ga0209806_100015643 | F023820 | GGCGG | MSSPAKTAILRAILPNDNSAKEALVLGTPAKTESQNVILASGNLTTEAIVGRIKQLSKLRDEILQVMRQLNLAREGSPSPVEQLDYDNELESARRELDEMRNQYQEAQGRIEDVQRQLDDSKKRVAVLTEMSQTGFATDQLESEVGDFRRILGRLPVKKLEAAQKAMVSQFKDQAILAVGNKKQDTFYTLVAAPKDKSSQALQTLLLYDFAPIEIPEYKSPDSKSEIQREEDRAKALAKELGELEPQLDDLRRKAGQTLNRRLDEVVDAVMLLRGILKLGEGTQASRIYARLERVLPAETMTNLSKRGIIELESSS |
| Ga0209806_10001566 | F011480 | GAG | VDSAIGKSVKATLRFYNELRKQVLARGEVVRPPTYETFSTMARGLMDAHKQVDLDRLKNASMRELFDRTWSQKLLNYSTQKLQREAYETLIRRY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |