NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209806_1000172

Scaffold Ga0209806_1000172


Overview

Basic Information
Taxon OID3300026529 Open in IMG/M
Scaffold IDGa0209806_1000172 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40373
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (62.79%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017200Metagenome242Y
F022617Metagenome / Metatranscriptome213N

Sequences

Protein IDFamilyRBSSequence
Ga0209806_100017218F022617GAGMRSNVMSLTPETYDRKFMASVPPMILDTLSQLENQCGPLTHISIQYQKVDLVIFPHNNQIVAISLEPGPLEPILRKLRDSLNIHIHL
Ga0209806_100017239F017200GGAGMQPITYSISKGLRAGAIGGFVGSIVLGITGEIGAMAMNQELFYTTIARKMGFADSSVLGGWTLHFLVGIIAGSLFVGATAAIGRFALTATKKAVWVGILAGIAIWVVVYVPVTAILLPADLTDATFAGGTFVLHLLYGVVTAIVSLPLLRRVVKTKTTT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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