NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209806_1000484

Scaffold Ga0209806_1000484


Overview

Basic Information
Taxon OID3300026529 Open in IMG/M
Scaffold IDGa0209806_1000484 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27044
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (65.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039073Metagenome164Y
F039560Metagenome / Metatranscriptome163Y
F058040Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0209806_100048413F039073N/ALITVKGGQDELDVPRRKEKLTIKSPGDEFETTDVQTRQGHDPQELKIYIKQLSKALKFLPLGSRAYYAVTGELLRASTQLKAVVPTGSAMKGEH
Ga0209806_100048419F058040GGAGGLVQDKILCFVCSVKGIETTFPTYYELQDHLYKDHDMTKDPAMEIFTKQKSLASKTSPPK
Ga0209806_100048431F039560GGCGGMESLVVSPTAEPRGSSDAKDEFFFLKLFLRYTVDSASRAGAAPIETELFGVETRVERRGFYSSPVVSSVL
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