NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209806_1000572

Scaffold Ga0209806_1000572


Overview

Basic Information
Taxon OID3300026529 Open in IMG/M
Scaffold IDGa0209806_1000572 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25255
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024084Metagenome207N
F031443Metagenome182N
F043826Metagenome155Y
F055991Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0209806_100057215F031443GAGMSAMSDTRASKDWAPFSKQIKLEESDWAIVDALYEDHRNREGVISKADFIRKLFLTGARSQLLYLRQHSPASLSRVARTSGTN
Ga0209806_100057221F055991N/AVAVLPTAKPALDLASHKPFQEFRVATLDELVKTLETAGQGIDVLAIKGVPHLVCGKPLANILVQTDAVKHVPGDLLAIYQYCEGCKVAVRVL
Ga0209806_100057222F043826N/AMVRAVGRSWGSVSLYVKAVLVLQVAIIVGLSVWMYNEYVSNPYLQTYLFGFFQGKGSLIAVLGFGGLLGTVLFGILLKAGSILGEIEHLSEKVENTNVVKAGLEKSVTMHVLKVVDAEPVDEIGRLHRSLRRWNERSKNQE
Ga0209806_100057223F024084GAGMKHQAGILGYCEMPTPKKLMELQETINEDLLKARLPEIRIDGFKLPDQALEITFERETVTGENRERLWEIINAHYRKLLRELELKE
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