NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209807_1000032

Scaffold Ga0209807_1000032


Overview

Basic Information
Taxon OID3300026530 Open in IMG/M
Scaffold IDGa0209807_1000032 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)59002
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010022Metagenome309Y
F010756Metagenome299N
F013745Metagenome268Y
F014723Metagenome260N
F071058Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0209807_10000321F014723N/AYHRLFLRWEVLRGWIPAMTFAAICVGLELLFFYNALNTGFVDKTVSIPIGSWTLPISIALFLSLGNALVVVTLWMNVFESTAYVKAGPDRQVRRILYPLRMVRTAALVLAPFTIILFAPYIVEANWFVNAVASIQAFKPTTESFYNWAFTVSQIDGATRFIISQMIAALGALIIAGLQLWRVKGTKNLVRAFQRRK
Ga0209807_10000322F010022GGALLALALLFGVSDSTGLFFSIPISILNIILGLVTRAPPGLEIQPESASIRFVIDRGVVRASIYQFVFLNSKLILKRLSSVMVTVVLAFVLAVVGLAFLFIVGALMGGITGFSLQEFLTQRMRNKIGSEMELTSVEKGDIEIEYDDILEVRLVKSRLYLTARNKSLSASFPRGYSRKIKPMMANIFESRFTTEESVRAAEAAEKENEKSQHPGGDRGKFPRR
Ga0209807_100003249F013745GAGGVGSNSKSHKARHRFGFSGRPTGEKKDRITTDDILASLTRQTELKQKLGKEDHVALEEIAETEDVSRFQGFNPEPESSTMVERKTDYGHLVFVFMLLIGLTVVWLYNSPSKPFDLTPLNRVLQKSDVQSIFANLSQLGIIALAALVGALWIRRKRRGSSQQFLSL
Ga0209807_10000325F071058AGAAGGMTKLSMTTRIGVRRIVIEVNRDLTVEQIEMLDETLKRLGLVKATKVTLHDQQPHRVRPQRASQPGKLPILENNQHNAPSEVKGAHSS
Ga0209807_100003259F010756AGGALEKRLFLLPFVWVVFGLGLVYGLRFLLGPIVNIVPTISNDKPIGGSIFSVLFFSVAAVLGVLAVSLYSLGIWNVDLSRRKDKADLGALLVLVTGGLLLWYVPLAFFAVVASVVYLLAVNI
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