NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256835_1000393

Scaffold Ga0256835_1000393


Overview

Basic Information
Taxon OID3300026531 Open in IMG/M
Scaffold IDGa0256835_1000393 Open in IMG/M
Source Dataset NameHydrothermal vent microbial communities from East Pacific Rise, Pacific Ocean - PIR-30
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33347
Total Scaffold Genes77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)74 (96.10%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vents → Marine Microbial Communities From Hydrothermal Vents In The Atlantic And Pacific Ocean

Source Dataset Sampling Location
Location NamePacific Ocean: East Pacific Rise
CoordinatesLat. (o)9.775Long. (o)-104.2801Alt. (m)Depth (m)2513
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027047Metagenome196Y
F045470Metagenome152N

Sequences

Protein IDFamilyRBSSequence
Ga0256835_100039354F045470GGAGGMIYTEFEPVVSPRMNVRVLPDYGFYRVLTVEPIGIIIKDFGETLAPGTEARNKELQEVYMQDNELAQWRIWVLDPVGIKLKVVGQERLRGSTKYSTSVLYSFSPDTNEDDGVSQFFSYEDEKIYVDIANLTYDILTTQRIKLMGYKYVLEKLEEEPEIYTDIPFASVR
Ga0256835_100039364F027047AGGAGGMDWYSLGIAVFSAVVYSLTMFVKKNLNSENPQSFDVAKFITTLIWGAIVGVVLQMSGAPINEQSVEQQFAMYTGLIAVTENIVKAIIRAFKG
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Institute for Fundamental Biomedical Research
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