NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209160_1002492

Scaffold Ga0209160_1002492


Overview

Basic Information
Taxon OID3300026532 Open in IMG/M
Scaffold IDGa0209160_1002492 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15318
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036164Metagenome / Metatranscriptome170Y
F044066Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0209160_100249220F044066GGGGGLRPPLPRLHAITDERIARRADLDAVARALADGGGSDLAFHARGRELTGLEHYRLSVQLSN
Ga0209160_10024929F036164N/AMLLPLLALLAGCERPGENTAQTRRLAGKALSGTLAYPRSTLVSVSAGEEAAQLVLSSPDSIKEVADWFLRALPLNGWDVKRTVSDGKGGVTIYAEQGKRPLWLTLHPNVGGLGTSYTMIGVIPTDSTKR

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