NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209160_1007478

Scaffold Ga0209160_1007478


Overview

Basic Information
Taxon OID3300026532 Open in IMG/M
Scaffold IDGa0209160_1007478 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8360
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078482Metagenome116N
F086931Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209160_10074781F078482GGAGVNLVAVQIPPCLNPQSETLPKIITIHPQRLRPTPTAGGAAGYTILETKLGHEGRIRSSRLGALFGVMGSVLYIARFLLPISAENPAESLANYDGRLAIVFGLVSTFSGIFLILFVLSLRAALPKRDSVLTTAAVVFSIVASIVPVVVNLIVLDARATLAGIYNNSTVTGVDRAAALVSEQVLQAEEEAIFAVYVGAPLAIGLFSGSMWKSKVFPNWLTYVGLAFVTVTGVGLLLVAIGAVVPGLGFAYLGLFVLWISASSAYLYRSGRKTATTDPR
Ga0209160_10074783F086931N/AMLYLIVASLLGVAGVVYLPLRMDIPPVYGHDKSLYLFVVLYWTVIAQRIAVGRQKKRATPTKPL
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