NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209160_1008749

Scaffold Ga0209160_1008749


Overview

Basic Information
Taxon OID3300026532 Open in IMG/M
Scaffold IDGa0209160_1008749 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7598
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (53.85%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → unclassified Thermoproteota → Crenarchaeota archaeon 13_1_20CM_2_53_14(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063506Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0209160_100874910F063506AGGLPAGVPVHERVDVPEPPAIEVDDRVHERLVELVVTASVTVPVNPLTGATVMVAVPATPAFTLRLAVLAVTVKSCTWKTILAV
Ga0209160_100874911F063506N/AVHDRVDVPEPPAIDVEDRVQDRLVELVVTARVTVAEKPFTGATVIVAVPATPGFTVTLAVLAVTVKSWT
Ga0209160_10087492F063506N/ALPAIAAEHDSVEVPEPPVILVDDSVQDRLVELVVTARVTVPVKPLTGATVIVEVPATPAFTVTLVALAVTVKS
Ga0209160_10087494F063506N/ALPAMVAEQDRVEVPEPPVILVEDNVHERLVELVVTARVTVPAKPFTGATVIVEVPVTPALTVTLLELAVTVKSWTWKTTLAV
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