NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209160_1093462

Scaffold Ga0209160_1093462


Overview

Basic Information
Taxon OID3300026532 Open in IMG/M
Scaffold IDGa0209160_1093462 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1544
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004003Metagenome457Y
F004186Metagenome449Y

Sequences

Protein IDFamilyRBSSequence
Ga0209160_10934622F004003GGAMTRLTRIAGLSATLVAAGLLAACGGPGTPLGPPSAKDVLAKPTHSSLKDAHFLVTGKFTSQGASVDITGDGALVYKAPGAGRFKFQTLVAGQQVSFEDISINGTDYTFSVPGNGKWTSRATTSGLGPNSFTGASDFTYVGEESLPKGKSWHARAKDKDGNLFDGWIRESDGYPLKYTITQQGNALTLSFDKYNSGESVAAPPASQVVQG
Ga0209160_10934623F004186GGALRHRPPPRSSRAKLPLRRSILLVTVAVLTVGCGVPTPAAAPSAKEVLAKPQQSNLKDAHFIVSGKITDNSVTVELVGDGALVYKPKPQGRFKFQTTIGGQTVIIQEISLDGMNYGLTPASPKWVATKSASGIDPNAFAGATEQKYVGEKSLPQGKAWHASAKDGDGNAFDAYIRESDG
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