Basic Information | |
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Taxon OID | 3300026535 Open in IMG/M |
Scaffold ID | Ga0256867_10008601 Open in IMG/M |
Source Dataset Name | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4475 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wyoming | |||||||
Coordinates | Lat. (o) | 42.9888 | Long. (o) | -108.3994 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F054533 | Metagenome | 139 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0256867_100086012 | F054533 | AGG | MSAPHVALHLPDRERDLLQSLAAPWRDLLYAPGPGFTSPLDPGAYRTSVVIVPVAGSAIRVSSVVMPAFGGEICRLRLEALPHDPPPSLGSFFEPARTGTVYALTPDRGCAAPQAPERAEWRYDGASLAPRLGRISGMHLLREHGRGPGCSWDADRGLAFTGADGEQSLVLAVAEPAEAAMFLPSPGLYRMLLDPAATPKPGVTVRDLLGHGDRDGSVETAIDLLPLP |
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