NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209058_1000577

Scaffold Ga0209058_1000577


Overview

Basic Information
Taxon OID3300026536 Open in IMG/M
Scaffold IDGa0209058_1000577 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31378
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006236Metagenome378Y
F015708Metagenome252Y
F022381Metagenome214N

Sequences

Protein IDFamilyRBSSequence
Ga0209058_100057716F015708GGCGGMSPSRTVQKAVTPDSVKSLMIIEAIVIAFFSFWLANEYVYNVFFRIYVNSIFIEHFTTYTIVLGLGIGLAGTAAAATLYKNLREAKVRLESVAPKIRGSVEKMLAAVPTMETQGAVPTISSVSVSQPASGASTTIGPPVPPPVSSSQQTEEKK
Ga0209058_10005772F022381AGGLDPTILVVSITGVAVTVGLIYYSFRTLFLFKRNVAARAWIYISLSAIFSSVGVVAFLAESVAPIGLLPVGGVLETVGASFLFLGLRKNFLFWASKDHFPDRFPFPFALFGNTASFH
Ga0209058_10005774F006236GAGLKIPPGTGLLLVGSGLYWVLAGPLIGWFTVLNPAQISLTQTGLTLVLSTGIASLVLGLWILPIDLEELSRLFSRNDGWIFLIPIELVVADIYLTLIGLSQGNWELNPFVASAVQIGPWAVVPFVVSYMALSEGLALGMLSIGKWLFGVVRQSRFVPFALICGAASFGPLSNTELLAFPGAGPVSYFVGMIIGMIALSVAIFLHFKRLS
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