NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209058_1001998

Scaffold Ga0209058_1001998


Overview

Basic Information
Taxon OID3300026536 Open in IMG/M
Scaffold IDGa0209058_1001998 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17035
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (42.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005486Metagenome / Metatranscriptome399Y
F008419Metagenome / Metatranscriptome333Y
F079660Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0209058_100199810F008419AGGMTTSTPVATTRTDVSAAIVLLLIAEATLFFTFLFVVGPIATLTRLLPLLAVLALSGALYWGQTWARWALLAPIGFRVWRLVPVTAAAWGLGRTGIALFLTLIILVELAAAFILLDRYLRYSRFPLPFHKNATIVSS
Ga0209058_100199812F079660AGGGGGMAEVSEQAKVLDGIVRYRFGDNAELMGAWASAHNVAGPFRSRPEPQVGGGETPTAA
Ga0209058_10019982F005486AGGAGGMPRITLLTLAALVAPFALAGQQPTAPPAPATTSPHDSVHGAIHAVDVGARTLDVKTGVGFALRIVRLQVPVDVPITDRADGGGAQPARIGLNALKPGDVIRATFGSRPTGLVAYVIQRVGRMDTGVGSTP
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