NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209058_1002391

Scaffold Ga0209058_1002391


Overview

Basic Information
Taxon OID3300026536 Open in IMG/M
Scaffold IDGa0209058_1002391 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15507
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013998Metagenome / Metatranscriptome266N
F055614Metagenome138Y
F091656Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209058_100239112F091656GGAGGVNDEIERIGRFRQFLRVEDKEIFDDLLRQCKHYAPYASTMASVVKEVPLMFSMLFGQHKMIFELEKRLSKLEANETRSSGVQDPSHGLETLVPASQQ
Ga0209058_10023913F013998GAGGLKMHRLLSLLAFVLALIGGVLVVVSALGGLARLSIGSLAINGLVFLFGLGAILGGWMIYTGIRKLGGIMTLIAGIILFVLMGGAGTSVLLVLAAGVLGLLAAELKPWWAFWR
Ga0209058_10023915F055614N/AVSSEDDASFEDRFSDQARKKAREMFERQPEPAAEEFDFGELFTRILLEKDWTDKLESAVVKIRNLFRIRNTDTKLSKELKALIPDMREVAEVYDKMTTGYKEFIQTVLDAKQSPFHQTRLKIESGESAKLPKHSVRHK
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