NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209058_1002905

Scaffold Ga0209058_1002905


Overview

Basic Information
Taxon OID3300026536 Open in IMG/M
Scaffold IDGa0209058_1002905 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13968
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014113Metagenome / Metatranscriptome265N

Sequences

Protein IDFamilyRBSSequence
Ga0209058_10029052F014113N/ALAAYAGAFNVPLKCSPEETKHFVEPAMKEAETSNFAGALEVVNDGLNAHPASEGLLFLRSYFCYKIADSISSELSTLPRPIQPLGEGVLMVDGAMTNQMLGRFQEIVKVLGDAEEAINEILQVNPRNNEVTAFRSYIDSKLQKLGQESENMRMTFTNTPNIAGNFCVGCRKNISFDTQTVVFRKTSSTQLEVWHLPCFKQLGNKN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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