NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209157_1004377

Scaffold Ga0209157_1004377


Overview

Basic Information
Taxon OID3300026537 Open in IMG/M
Scaffold IDGa0209157_1004377 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10570
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006137Metagenome / Metatranscriptome380Y
F010988Metagenome / Metatranscriptome296Y
F093597Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209157_10043772F093597N/AMKNPLENFDYRIPCDDFFLYELGRLVEEDRASLDDEEFRRLIDAGIHEHVERRLEMRTEIAAHLRKLRSAPVRVLRFVEDIEAPLHDVPTIIQSYVAYLIRRLEQCVDEKPDEKVQAAADLLLESPEDRSAAEAAMETLGSIRSAASARVLAYVISEPVLEEDLEMKAYTLVRAMWPLARPYIFYSLKPHAHEDIPFRWFQLLIECGEASAVDRILEEVLAHANHPDYREDLLVLMELLGQARDPETEGKILQMLNSDETPHTVREILDGFLKRSKTPKHKETGSPEPWASLERLYAANKKYLEAAKLFDTGQKAAANRKLDELLREQPDYPFVLMLKQYCRGGLRPPPTSKPRDRGRS
Ga0209157_10043777F006137N/AMQENRKRFHWHKTVETSAADLLRECGEKLTDRALWTEFQGRFQRLIFLYLMRALRLRRPQDDTCDVVPDLAQEVYLRLVQHDGRVLRSFRGTTEFSVLAFLGRISSSVVTDYQRQLATEKRRAPVVPIESIKAGELTGSRSAGAAEFDSNAIGSILSWIDVERIVEGDPDRKNARRNALIFKLHYIDGFQAAEIARFPGFELTKSGVESILARMRKRIQE
Ga0209157_10043779F010988AGGAGMNQINRRDFLSVLGGGAVSVTGVSAFASTSSDKSPADVTSLYVKGLVLLDLGNPHLIRLGFPKAPGHKATLSVVPQNGLRRTIAIKGNGLVEAQGIVFPEPKIFVPELVRMKEFYGEGVKSRVDKCPSVISIPSNAIRSISTSEVSKARYTFVRADNGEEVTGFRPRQVAETIKIDLSSAGVLKLDDGKVNIPLDTTRELRAEYAPERTESGLDPYTDHFGHYFSYIERPAALDFDVVPRRISGSTSPTPRVGHHFMMTDSYAVCYIAAVP

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