NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209157_1009918

Scaffold Ga0209157_1009918


Overview

Basic Information
Taxon OID3300026537 Open in IMG/M
Scaffold IDGa0209157_1009918 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6468
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014723Metagenome260N
F023077Metagenome211N
F102968Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209157_10099184F023077GGALKKRIPVLAVVMMIAMALLVSPVHPATMNPQENVNLYTGNRLVIDSNQPSIKSVVVRGNLTAATLSNNAYPSKNFTLTTNSTQLYTVDLLLSYQAPYTSEIVISDPSSGSKTQYTSYFVSGGDLNLTIFASFQTAPSTGPSVPLGWSSFYGWVSQFGGAFPFWIKILYTVLAAQFAFVGYRWIKFEDERRRIEGHLPPLDRGNKVYLWTEVVFRTLVAGFAISLAVMIGEVLVLLIAQYLFFVNLDLVSLIDFFSIFFVAALGTLVYLTREGLERIFDLKPIMED
Ga0209157_10099185F014723GGALAEQYHRLFLRWEVLRGWIPAITFAAICVGLELLFFYNALNTGFVDKTVSIPIGTWTLPISIALFLSLGNALVVVTLWMNVFESTAYVKAGPDRQVRRILYPLRMIRTAALVLAPFTIILFVPYIVEANWFVNVAASIQAFKPTTESFYNWAFNVSQIDGATRFIISQMIAALGALIIAGLQLWRVKGTKNLVRAFQRRK
Ga0209157_10099187F102968N/AVTVTIILAFVLAIVGLEVLGIVGALMGGISGFSLQEFLTQRMRNKIGSEMQLTSVGKTDIEIEYDDILEVRLVKSRLYLIAGNKSLSASFPRGYSRKMKPVLENIFESRFTTEESVRAAETAEKENEKSQHSRGDRGKFPRR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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