NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209157_1017165

Scaffold Ga0209157_1017165


Overview

Basic Information
Taxon OID3300026537 Open in IMG/M
Scaffold IDGa0209157_1017165 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4597
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039542Metagenome163N

Sequences

Protein IDFamilyRBSSequence
Ga0209157_10171654F039542GAGGMTDLAVLAIGLGVIPLAAILLYSLRGFVLAHREATWGFLAGVVAFLALGHAMAAVLVNKSLFGDPPIAIAVAFLGLVVGAGIAWSLLEGPFIRTEPNRILCVAVAFLALHSFADGLVLGRDFVGGVVPSVQLDGLTVSATVVHRFVEGSLVVVPAIWAAWKARPAFALLLVSIASVVGAYIPGVVFSLYGGSLRSLVQVAIPTFLAAMEASLGLLLLVRGFLPIAAADRGIRWPLWTAVGFIAISLVHFFVE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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