NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209157_1043961

Scaffold Ga0209157_1043961


Overview

Basic Information
Taxon OID3300026537 Open in IMG/M
Scaffold IDGa0209157_1043961 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2432
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002419Metagenome560Y
F074661Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0209157_10439611F074661N/AGFLAHAVTQCPQAKAVTFDAFSPSLTAEALFRSVERIRAAL
Ga0209157_10439612F002419GGCGGVSDRALQDDVIRALADAPYRESAAWRARRLADPDRVERFARFLARHFYYERVVHFFKYSRALARVTGRRPEAVLTRPGFEALVPTIVLGSRQTAQAVAQLVVTHVGDAGPVIPYLADLLRYEAAMMIVEAGPRIWRDSPERKDEGVGRGEWSAPQKVEGTVLLELAYDLPLVLPQLLRPWSDVPQAPARSTTLLVARSPHGRVAVARSTAAVAALLRLADGRKTLAQLALDAGLEVRELEQTLHGLVELGAVRFSTGS
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