NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209157_1054611

Scaffold Ga0209157_1054611


Overview

Basic Information
Taxon OID3300026537 Open in IMG/M
Scaffold IDGa0209157_1054611 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2094
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018144Metagenome / Metatranscriptome236N
F025252Metagenome / Metatranscriptome202N

Sequences

Protein IDFamilyRBSSequence
Ga0209157_10546112F018144N/AMVVIVVVAAVMVYAWSTGLLSSLLVQNPVPKETLNYDSFAYGPASNITIYIRNSGSATVSLQTYYVKDNSGNQYTSPSSWTFGPIQPNGVNATLIKIGPLCSPACTYSGSGTGFSFVNGNSYTITVVTTRNNQFTWTLTK
Ga0209157_10546114F025252N/AMTVYRRLARSKKGMSTIFGGLFFVIIILMGFNVMLWGFIQYDAYNHVITSMSQRDQQAVSENLIPINATYPTGGPLSVIVNNLGGSSVSIATIYIWNTNTTGQCRPTPCIFNPPPQLSTYFTPANIPAGAVNFVIHVVGINVKDGNSYRISLATTRGREFNLYYPWRFSSLIVNGGGGNFVTNIGPLAVYFDTKSFNY
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