Scaffold Ga0209056

Basic Information
Taxon OID	3300026538 Open in IMG/M
Scaffold ID	Ga0209056_10001727 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026538 Open in IMG/M

Scaffold ID

Ga0209056_10001727 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23958
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (73.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

23958

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (73.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002266	Metagenome / Metatranscriptome	576	Y
F007071	Metagenome / Metatranscriptome	358	Y
F007642	Metagenome	347	Y
F008127	Metagenome	338	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209056_1000172712	F007071	N/A	LPVSQFIAWPIFFLLTSAISQQPAYFLALLLVLAADVIDKSPRNRGLFRDLVAGGTTTLLALFLSDVDGVAIGAVVTVVATSRLVQKLN
Ga0209056_1000172715	F008127	GGA	LLNNKGYQTFSSCSGGHPTNPRWKVNRHESGYLAFSPPSNVAFALYLGLRKKNRDFTVEAQAVIDDGDGGDRETVCTRFYWQLSDRKKHKLEHYHKLFSQMREIIEGLPRAPGNGNEVLTGLFGKGNLQTGLRIVKGQMKRFTAN
Ga0209056_1000172716	F007642	N/A	LSTREAVTVPEKPLAEVLVEGELSPFEHEVLYRILRKGFRLEHPSYTELLDEDLATRVNITFHYPYVTTIFTDVLQENWRELKELLRQVRYRRGKAGAAVTLSFLGEKNKLVFKSGVLEEKELSSALDQIGHLTGILGQMLRPETMDKPLELVEAVYDKKSDRWHEFKGFASADQNQSYVFDESVFRWIRL
Ga0209056_100017273	F002266	AGGA	VLRVREHRLKPSFRLKTQDEIVEFIHARGLVSALGGNELPSFISAILGKPWKPSAKGFTGWMDWWSIKISGQSVARVSRDIEGRKDILATRIFRRTKTFVSNKLWPILDPIVKHHQDPAVKRQILSDIELKILETIGTEGSIRTDRLRKKLKLETKENNSKFHRSLNNLESYALIVGVEDPHPEKHLHANIWQTWDTRTHEGKSHAILPYSEALGKLFVKTIDACVIAREDQIPTWFEWSSEMQAAKEQSLLDGAILRSGHYLVSSRVRDVNN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209056_10001727

Overview

Ecosystem & Geography

Associated Families

Sequences