NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209056_10002644

Scaffold Ga0209056_10002644


Overview

Basic Information
Taxon OID3300026538 Open in IMG/M
Scaffold IDGa0209056_10002644 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19166
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (70.37%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034123Metagenome175N
F079864Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0209056_1000264418F034123GGTGGMKGMKGLFDLGGKNVLRLGLLVFSTLLIVGGSVFFYDRLVYERALSVGGVITGSSSTTPTGLNPTPGTILILAVSAVLISLSVFGFLREVFRGRRNSKALAKELSPTDSVSLPLKIGPPLQVPSMQRDWEESPKKEEGKH
Ga0209056_1000264424F079864AGGVDCYARREKRIGWDSFQHREYVLLSLLSLFLFVTTFNTPVHAVGETYTLTESAPRLQESSTASVLLILNVSNANAIANYAFTWNVKDPSGSIHQATNATNVPHAASFVESVVYPGKFSSSPSLAYTGVYAVWVNQTQPLLVGSTGVANGQFQVGLTDSLSYPRTFPVGVKASGYAPNLNVTIMVSGSGGPTLGFPLNKLADSNGDLSYVWPSIPASTPLGNYMLTLTGSPTKTPPDVQSFTVTATNVTISPLTISLSYLQRSQTEDFRFSASYPNGAQVKTGSANLRLVEADGLTSHYVGMAYKSTLGVFRGTFQIPLSSEVGPWVATVEVSSFDDGYGNKGPISSVLKPFTVSPPIFTVSATTNYNNYTIGRIVVIYASVVTPGGYNFTSGTVTATTYHSSSQIGSPLLLFYDQSRAKWVGSYTVNSTNPYGIWQIQVNASDSYGNMGQGSTSTLVSVPAAPPQQSSTFNYILVVLAVLGGLAMLVAWMVFGRRRVLRRVLKVDLEAIHAEAKKVENQDFFKKVQEQLKQQKSESEQSKHSG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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