NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209056_10004643

Scaffold Ga0209056_10004643


Overview

Basic Information
Taxon OID3300026538 Open in IMG/M
Scaffold IDGa0209056_10004643 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14473
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015710Metagenome / Metatranscriptome252N
F024389Metagenome206Y
F081674Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0209056_1000464315F015710N/AVLSVVFFVLAIISLSILTLYLIPDFIVLALGAMDIATILNAVSRMIYLRTIPDPNERRAKAASTVKFFHIVSYACFGIAAIVFAIALNDLATDFGVMGLELTGCGTILRAVSRDIQLEGV
Ga0209056_1000464318F024389N/AVLSWRDCVDEDVTGLIMKKRKFLSLVVVLATVIVAAILGYIYYEYIPRVLVDDTQTLKENHIWQFDLFVLGNRNVNITVSTAQYLVYVTFWYQQNSAATTYLINKPVTNTTQASFPVSVQQSGTYYLNVQKTEQYGEKVTTVVHVEVTS
Ga0209056_100046432F081674N/AMAIEHAMVDYGIVLGLLGVASGAASLIYSRSQVVAARRQAEQATRATLLESNREISVRLQQIRARFFKVPGIEEELQNSRPKIKEVVDSVGGGDVYYFFRDVIDTFEDIFVLRRSRIVTDEHWRVWTGSQMAVYAGLPRFQLVFKLAKQEAFLDPEFVKFFEPLLEGRPVRDPRVPSGDTNSTRLPRLRKTRSKQEEETD
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