NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209056_10007237

Scaffold Ga0209056_10007237


Overview

Basic Information
Taxon OID3300026538 Open in IMG/M
Scaffold IDGa0209056_10007237 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11434
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048197Metagenome148Y
F091681Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209056_100072371F091681N/AMKEGKKAADVEKALQHWTSSVIDPQLKPVQAKTRQLAEAALSLASSLESRCREFIRNTKYDMSGLGDSRRLRAAMALNRVSGEIVTASGDFLKTSPNESISKLETSITRLLRAAGSSYNESVKAMASHYASERGWLRAEIEGLQRINHQTSQFRTRTRDITSIRDQIQERSKTLVENLTTLQNLENSHVQLEKEIHQLAYNEGSLLEAIERIESDSEIRALNAKESELKALRKRLLNEEMSRLGGLFTKVLSLHQRGEVHIHLQAIEVLTRYVKAPLTTLAKESDGYPELTDSLEGVCESIESNRLPLGEKKARKTLERAKRIINGSLRPIQKEAREAFAARSQILRSPHVRQL
Ga0209056_100072373F048197AGGALFVQVILGGGSFVLGWDVRYHLVWGTLTFIVLIITAVLARRDFGTTSTLFKVGLVSILDFVVQGILGLFSFGSGVAIVVHLTNAFLLAVIVTYLISFADSADKTSTTVALQTKASPSGKMPA
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Institute for Fundamental Biomedical Research
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