NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209056_10007899

Scaffold Ga0209056_10007899


Overview

Basic Information
Taxon OID3300026538 Open in IMG/M
Scaffold IDGa0209056_10007899 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10934
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011480Metagenome290Y
F012856Metagenome / Metatranscriptome276Y
F016793Metagenome / Metatranscriptome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0209056_1000789913F011480N/AVDIAIEKSVRATLRFYNELRKQAVARGEPGKLPSFETFSTMATGLMEASKQVDRDRLKNLSMRDLFERTWAQKLLNYSTKKLLKDAYETLSKRF
Ga0209056_100078993F012856GAGGLEKPSWTPIVLSGAIPREATDLLAILVMGTVALEASLATIGPAAFNSRLWLSLLVVPPTCALASVSTTTRRTREELALFAYGGSSWQILLRYFFRGALIALIAFSPIILQVFLATASIFELTVPVIVLFLVGGLFYSLPSLRRIRSSSFVENYKS
Ga0209056_100078997F016793GAGVVVMTSKARKNKPTRIEKVLPLGKVIGFLRQQFHDPYLNPEAEVSFADFQAAFPEIPLADLEEGLSHWVMRPGAKVLSTKTTYFDGHELQVWYVHGLHEEHAELEDFVSRAALQA
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