Scaffold Ga0209056_10025724

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209056_10025724

Scaffold Ga0209056_10025724

Overview

Basic Information
Taxon OID	3300026538 Open in IMG/M
Scaffold ID	Ga0209056_10025724 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5656
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000120	Metagenome / Metatranscriptome	2081	Y
F004529	Metagenome / Metatranscriptome	434	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209056_100257247	F000120	AGGAG	MKRYSSIIHILSLACACLIAGCATQPGAATAPPPNSGLVLIYRVANFGSDLSLVVSVDGKDVGSFTEGRNYSGYLSAGQHRLTARVDPNPGGKRPGRKTLTVQAGQTYSYTAAWSGQKLVLVRNP
Ga0209056_100257249	F004529	N/A	VPLDKSTIQSVTPSQIYEWKAPESNVPLTPETDTRIAAEQKWYNLTGRLVGVKVEADGDITLVLQDADRKKEGSVGAEIPVGPKWCELRQTVFGWTTQSFPFTFKGSQRLEMREPHVITVTGKAFFDVDHASADHSNR

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