NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209056_10031920

Scaffold Ga0209056_10031920


Overview

Basic Information
Taxon OID3300026538 Open in IMG/M
Scaffold IDGa0209056_10031920 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4954
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011479Metagenome / Metatranscriptome290Y
F017116Metagenome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0209056_100319204F017116AGGTGGMTVDVLAIFETFNLILILVAFAIFIRLAFKGKSLGTFRFQLSIFLLIWVMSEIPHIAESLGLIAIAGYEDIGLYLHALSMIVFALFVGWRSLKFATLHPPPATGALSVPTERPEVLKG
Ga0209056_100319205F011479AGGMSFDDLVSQSVVETMSKILGTDTWKSINFFFDMKTIAREPEVFAALLGKVFGSTSKVLEKKIGETVLGKVGAVQQMPGNVDFRQILRLAKAKFPRQPLPDQLGP
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Institute for Fundamental Biomedical Research
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