NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209056_10094477

Scaffold Ga0209056_10094477


Overview

Basic Information
Taxon OID3300026538 Open in IMG/M
Scaffold IDGa0209056_10094477 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2464
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000696Metagenome / Metatranscriptome931Y
F006125Metagenome / Metatranscriptome381Y
F006480Metagenome / Metatranscriptome372Y

Sequences

Protein IDFamilyRBSSequence
Ga0209056_100944771F006125AGGAGMPITISLSPLNVDSSASNFVYAIGTLTFSGNYPTGGDTLDFTQVADKLPSTQIVQAFAESQNGNSGYYVAIAGSALNNWKLKAFSGGGTEI
Ga0209056_100944772F000696AGGAMPVVGSSAYNTAGQITSLVRSLLNDSQGNLFTDAVLLPYANSAYRKLQRGLGNVGGGGFIQDDALLVVTAVAQPDTSLQVSITDATASPNQLPTDLLVPLKIWERPNGSTDDFLEMVDLTQHGGLPSRAQDITLSVWEWRADGLYFLGATQDTQIRLRYLKAYPDFTDATSPVLVRNAQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLINAAVRREQQSAHRRRPFSARSGYTPF
Ga0209056_100944774F000512N/AMIRVVRETHDTPESVAHRLAGAGGANRFSEPNYRAVWGWNRLAWIGGKFEDRDGHGVLLRERIELRLEPKYPAVSRWHIERWVPPETYGSPRSWYAQTVERENGISIPALGPYPSRGEYEHCFTLEGPHGEFIQLTATAAEHIARAIEWSRKLVRSAKKGQLYDREGREERSYENWAYGLLDDAVPAFHKQPFVTVV
Ga0209056_100944775F006480N/AMRRILIGGLALLLCGGISARSKNDPLMFVFLRVDRGQDVAILRPMIAPDIGVQLDSGPRELKAGTVLQCASSLREHDAIVETKIATVTDLVLDCGAQKFVVKTIDFRPAAR
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