NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209376_1083078

Scaffold Ga0209376_1083078


Overview

Basic Information
Taxon OID3300026540 Open in IMG/M
Scaffold IDGa0209376_1083078 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1697
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017460Metagenome / Metatranscriptome240Y
F061718Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0209376_10830781F017460N/ARNLCYVATVSASQSSAAFSRSSGFGSIWETGWDEPTGKLQGVKKLKKIIGNKKGIDTILAALLMVVIVVVASVMVYAWSTGLLGTLLVTPQTGKEAMNIENSAFNSVYNVTLDLRNTGSSSITLNSYYVKDSSGNQWSRLTWQTDAGGQHPAAIAPNALGIVYVSIGNGATGSGGQCGSSCTQTGSFPQFSTGFSYTIVVVTSRNNQFSFTVTK
Ga0209376_10830783F061718AGTAGMRNRKVSTVKWARSRVKKNRSSQKGISTIMANLMMLVIVVSLSGLLFVWATSSFGAYTGGAGYWFTSRSIANQERVSVEAVYFGSTGSVNNLVTLYVRNVGTTPFSIASVYVNATLYNWAGGSIPVNQVQQIPLNLSTGGQSWAKGDLQNIRVAT
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