NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209805_1007075

Scaffold Ga0209805_1007075


Overview

Basic Information
Taxon OID3300026542 Open in IMG/M
Scaffold IDGa0209805_1007075 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6145
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022846Metagenome212Y
F047595Metagenome149Y
F095252Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0209805_10070754F095252AGGAGGMKRSLLAIALVTGFIFMAASVFANPALLKKRHEGYPNPDGGTTASGEAAAEKSAADAPKLLKDQTKAAEGDIRDQDQIKHSQDSRLPEVVAPHHVTTKGVTENQIKNATKVNAEPK
Ga0209805_10070757F022846GAGGMPQASPEEVGRELSDLAFGIVEQNWLEQHIGKVVDLKTLDQLQINVAEWELTYLILFAITSGCGTFSAADSARTTAILKAFHSTLFSHIAEQAGQEVADEHKKNLPARYRLYGPAIEGEDTNKPYKTPYRLLGEAAALQIAGKPLPDPHDADNFRETIKVIFTEVREAAIKIMNFQQAQATEEKA
Ga0209805_10070758F047595AGAAGGMDFDIGSNHYRNAAPSIEIEGMPHLSFEHNRRYNEMTLRGFLYDTKGNLVAKIVESSLAFNVQGEFEMRSEPSVVKLLRRETEEVILEVKFLDKNRVQIHKAKLYSIKGRPFEVTPKHWKLGDDAPHSGEDMDCEGKPVSLK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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