NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209156_10000271

Scaffold Ga0209156_10000271


Overview

Basic Information
Taxon OID3300026547 Open in IMG/M
Scaffold IDGa0209156_10000271 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43359
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (68.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000574Metagenome / Metatranscriptome1016Y
F099105Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209156_1000027123F099105AGGMRRAARVGRWCGIIAFGLLAAPVRPCDAQTGSDTAVTVYGFLQAGDSGRWSLLLPQPVTAAGRRIGVLAAADAGARWQRMDGRFVEATGRVTLSSAVPGGAGIAIERLRELEPPGTRRTAVQLSSSQLAVVTLAAIPNRFAWRADDGQPTGVQPLLMYTVYNHGQTQLDFMLPTDDAVCVRVQREKDRGGGGDTGGWHTSLPASTGNRERIVIRLGGLFRRFIPIPPDAAPLAGRYVANVTLCGVADYQVETPFEVVTP
Ga0209156_1000027128F000574GAGMSTPLAVVLAWLALSPTFHVVILPAAVRSVMSDLWVENNRHWDELAGQNTLTQLLGTGKPTQREYLGCLEGEVVGDTLFVRRLQPAADLRQLQFAVAGKCDGVARLVGSFHTHPYRADSAGRAIKERGLSAMDLETFAASSDLVTVVMWDRDSLDVATKAEDGSVRHPAPLAVR
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