NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209156_10100267

Scaffold Ga0209156_10100267


Overview

Basic Information
Taxon OID3300026547 Open in IMG/M
Scaffold IDGa0209156_10100267 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1441
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014723Metagenome260N
F071052Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0209156_101002672F014723GGAMTFAAICVGLELLFFYNALNTGFVDKTVSIPIGSWTLPISIALFLSLGNALVVVTLWMNVFESTAYVKAGPDRQVRRILYPLRMVRTAALVLAPFTIILFAPYIVEANWFVNAVASIQAFKPTTESFYNWAFTVSQIDGATRFIISQMIAALGALIIAGLQLWRVKGTKNLVRAFQRRK
Ga0209156_101002673F071052N/AMMTAMALLVSPVHPATMNPQENVSLYTGNRLVIDSNQPSIKSVVVRGNLTAAILSNNVYPSKNFTLTTNSTQLYTVDLLLSYQAPYTSEIVISDPSSGSKTQYTSYFVSGGDLNLTI
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