NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209161_10001879

Scaffold Ga0209161_10001879


Overview

Basic Information
Taxon OID3300026548 Open in IMG/M
Scaffold IDGa0209161_10001879 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17251
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (81.48%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004922Metagenome / Metatranscriptome418Y
F016134Metagenome249Y
F053955Metagenome140N

Sequences

Protein IDFamilyRBSSequence
Ga0209161_1000187917F016134GAGLQDRSSEAAQFLKSKVEGKMKTKGTQLQIEGAKTKEVKLLLHKFLHHQGLNHYRVLSQSGVLEVTPPEKHVVHEPERVGSPPTAPQTTPYYFPQTPVLTTEKKKKAKPKHKHE
Ga0209161_1000187922F053955GGAGGMQACNRAGQTRVTTIELALTSTLAAVYIVSAFFALTPFIGGPGFITLEIVMLPIVAFLLRPILATVAVLFGSIGSTFIQTGFYSTFGFAGLLIPLLAVALGSIAFHYDWGAIIPWGYVLAGAVYYILFSKGGTLFWLAPYILVIASLPVALRVREPYQLGLLALYTAMSEQVTLNVLSISLLNLTGVFWTGVTPLMFLERTIATLGGFAVIVALKSRLGARLELGHVLREVK
Ga0209161_1000187923F004922GGAGGMCVTAVVKCWHCGEWFAKQANRGEFENCPFCGKGFEQLSVEAQRAVKATLAPFFEVPHLKERPLTA
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