NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209161_10004048

Scaffold Ga0209161_10004048


Overview

Basic Information
Taxon OID3300026548 Open in IMG/M
Scaffold IDGa0209161_10004048 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11673
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000611Metagenome / Metatranscriptome987Y
F032969Metagenome178Y
F081123Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0209161_1000404811F081123N/AMIYSEKLLKDLNLRLAHFGDPDVASARSLLPSSIPSSNAHQRCLEIAAKLVFKIE
Ga0209161_1000404814F032969N/AMPRSPRDSYAHGQGTKPKTPRRPVPKGVRIPPPQLFRCPRCSAMSFQVLFHERDVAGFCAECNLRLRTDKTIGRRTPEYYAEFTRQVEASYPDRIQRIFLKANSVSEAKRVYPVVRRLGYRTKQSSPMLHARLVMVETTRGQAVVLIEKLREQGMQVALQDDLHSPPR
Ga0209161_100040487F000611N/AMNFPTYVFATVNPGRSTKVVDELKRNSQIDIIAPVTGRWDLVLRLKPNTPHNIYQTVKEIREISDVRTTDTHSGFDGMQPSKKLESQMALGFSLLNVQHTSVENTIKQLSNISGFVEACTVPGQFDIVALWQARTSEDIVKASFEKVNHLEGIFSSETLLAYAPIFKA
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