Scaffold Ga0209161_10006268

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209161_10006268

Scaffold Ga0209161_10006268

Overview

Basic Information
Taxon OID	3300026548 Open in IMG/M
Scaffold ID	Ga0209161_10006268 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9297
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031443	Metagenome	182	N
F055991	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209161_1000626811	F031443	GGA	MSDTKASKDWAPFSKQIKLDESDWAVVDALYEDHRNREGVISKADFIRKLVLTGARSQLLYLRQHAPGSLSRVAKTSGTS
Ga0209161_100062685	F055991	AGGA	LDRHAFGYFTLKLEPLHVSLSECLLRQIATRPDVAILPKTKPASDLSHKLFQEFPVPTLDEFVQQLETVGQGIDVLTIEGVPHLVCGKPLTNILVQTDAVKHLPGDLLAIYQYCQGCKVAVRVL

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