NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209161_10069425

Scaffold Ga0209161_10069425


Overview

Basic Information
Taxon OID3300026548 Open in IMG/M
Scaffold IDGa0209161_10069425 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2220
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054694Metagenome / Metatranscriptome139Y
F063509Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0209161_100694251F054694N/AICTRNTGSNWTLIQARPGNTIQHSCTPDTKLELKVGPDYSIEAGPASGIGQHRIILVENFVNAPVDVITGKKHLGTTNANQALGKPFSFTPPLSAAVIQPSRYNFLNMTSILFIVSGVWLGLLASFSLANPAVLGVFAVLALAAVVSGIFLRKPNLWPATLGLVAIAAAFVAQLLIQFGTGLTASATALDILLVASVVTGWLSWSRVRSLRAKQWHPLDMPAYG
Ga0209161_100694253F063509GGAMVRLLEKVTNHECPRCGRTQLNVYFSDQTDNRVGAWCEFCNLKAYYFGETLVPINS
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