NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209474_10076947

Scaffold Ga0209474_10076947


Overview

Basic Information
Taxon OID3300026550 Open in IMG/M
Scaffold IDGa0209474_10076947 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2302
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000146Metagenome / Metatranscriptome1918Y
F032458Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0209474_100769471F000146AGGAGGMAVARVVTFDGVGKARMDEMTRSMQEGEQPENLPATEVIVLHDPEAEKAVAIVFFENEDDYRVGDETLNAMPAADTPGQRTSVTRYDVPIRMTS
Ga0209474_100769472F032458N/AVSFAAVGLVALATPMLSLGGAPAATPVSGLRGLVLQGPTAPVCRSDDSCEEPARGVVLRFTRAGKVVAEVKTTSTGRYSVRLRAGSYGVKAPRRRVGTGLTPRIVQVPRGRIARVDFHLDTGIQ
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