NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209648_10000088

Scaffold Ga0209648_10000088


Overview

Basic Information
Taxon OID3300026551 Open in IMG/M
Scaffold IDGa0209648_10000088 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)57971
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001727Metagenome / Metatranscriptome645Y
F006427Metagenome / Metatranscriptome373Y
F041038Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0209648_1000008846F041038GGCGGMTQWLPYLFLGLFLLAALAWWVWNAIVHRGTAEVLTPRQYHLGARSGSQRDLGDRIFGPQDWGFVLRETPSKIQRMFQRERTVLALAWLRRTRMRTSEVMHSHVAVARQSEDLQIVMEIKVALSYLLFLILCNFLIGWIWLRGPVRTRKIVRQTLQWVAWQRGALRRLMAVVDPANCRALETGFNRGMPQS
Ga0209648_1000008849F001727GAGGMDGDARPPERSFRVNPVDRLGRRMSAAVHDAAEEIAHRAVLHAEKLHIDPAVAASLLEEAAARVSRAIDRKTDSNEQPVRDLRAYLFRAFLRLVNKAVKRQLLVADAIRTLSVTSHNSTDPLAQLERKILVDELLTRGDPVARDMFYRRTQKFSWDEIGLSYGISGHAAESRFSQALRKIRERLDPNSGL
Ga0209648_1000008850F006427GGAMKDRRAFEKKDKDLLDFAHSYLSEAFPNPDRQGCPPDAALRSLALSPTESEPTVTGHLAACSPCFRRYAELLAQLRSQRAADKRLSWARVATWPRSHPVLVGAALVCALSIAIGASLLLNRIRVPNPPLDANRAPYPVQPVNPMVVYAPFSLDLSTLSPVRGSEPSGTASHQRIPVPRSPLYLTLTLPLASEEQSYNIRLTAGGHAFWSKSAQAHLQEGKTLIRVEADFRQVPPGSYNLEVESSTGIRLVQPVLIEIALPNGTERKR

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