NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209648_10000118

Scaffold Ga0209648_10000118


Overview

Basic Information
Taxon OID3300026551 Open in IMG/M
Scaffold IDGa0209648_10000118 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52106
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (72.34%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017051Metagenome / Metatranscriptome243N
F025365Metagenome / Metatranscriptome202Y
F033968Metagenome176Y
F085194Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209648_1000011810F085194N/AMRGVERERKLEGKPPLVQFLPRSKRLKKTTKKTEGVHSSHKLTGSPTPASRVGSIVPEDAHA
Ga0209648_1000011811F017051AGGAMEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAGLERRRSRINLQFMLEMRKLEEDDESRFEEEYNVWLSDEPLTNAKSVN
Ga0209648_100001185F033968AGGGGGMKQKWGREDDAGDFPSDRAVWSMGAFCVALLSVFAIAGHRYMRVWTPLQRHYLLTYAATPVAGAFRTDAPCTLLMVATRKGPRLALDNELEPFVTEKGESTFTLTEAAMKTGDLKLE
Ga0209648_100001189F025365GAGGMPRKRKPKAVCDGDPPLTPITAKERREIDKSIKRKYDRFRRRYPEVHGKVVDFITHSIEDGTRYFSVRFKDKTDFSLRYACDMFVVGADLCDFKTGDFEMIREYMKPIPT

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