NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209648_10000172

Scaffold Ga0209648_10000172


Overview

Basic Information
Taxon OID3300026551 Open in IMG/M
Scaffold IDGa0209648_10000172 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46702
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (77.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000417Metagenome / Metatranscriptome1165Y
F003039Metagenome / Metatranscriptome511Y
F003144Metagenome / Metatranscriptome505Y

Sequences

Protein IDFamilyRBSSequence
Ga0209648_1000017210F003144AGGAGMSRLRRAFTLPVHESKVVLVLMLCVVSMSLMSVALVWQAQIIDGQREAIQWLQSVRFGG
Ga0209648_1000017217F003039GGAGMKAQELKYVTRRRAAVLLGLSEMELNRISSESGFGHKEVAGEQEETYFTYEELRQICMLAVHQVH
Ga0209648_1000017250F000417AGAAGMTRQLCVGFCLALVTAAIPLRAANRPHAGTDRQSKVVWTNDDLDKLHNLGIISIIGREDDERSASAPPPAPYLRTQDPRWYAEQAARLRDELEYRQSQLHQYQQAIDDARNLRESTGGIDLVGEDFAITPEAGIEILQQRVREEQEKLDDLEDLARRNDIEPSTLRGQ
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