Scaffold Ga0209648_10000986

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209648_10000986

Scaffold Ga0209648_10000986

Overview

Basic Information
Taxon OID	3300026551 Open in IMG/M
Scaffold ID	Ga0209648_10000986 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	22684
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (69.70%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Laytonville, California, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000169	Metagenome / Metatranscriptome	1788	Y
F009096	Metagenome / Metatranscriptome	323	Y
F094984	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_1000098615	F094984	GGAGG	MARQQATLQNLKSIAAAALAGLGLLMLFGMTDEPTAQVTNILGFVARVAMELLPCVVPAAWRALETYASDHQGFSPCLVQMLVSCWSLVHGLAAAA
Ga0209648_1000098622	F000169	GGAGG	MAKKSRLTQVAVKIGTAMGRADRKAHQIVKAGKMAKKELADISKQVDALKRQLQTTTKRLRKALT
Ga0209648_1000098626	F009096	GAGG	MVPLASTTVSKQRSERRIAVRLPLKVSGRDTHGFAFEEDTASENLCRNGAAFVTRFDVAIGSDLEIRIAFSQYGSRRAQPERLGGPANGSRFSGARVNESDFATHGRVVHVADSRCQGEKLVGVQFTGPRFQRVFRSESAA

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