NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209648_10001015

Scaffold Ga0209648_10001015


Overview

Basic Information
Taxon OID3300026551 Open in IMG/M
Scaffold IDGa0209648_10001015 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22422
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (82.61%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004353Metagenome / Metatranscriptome442Y
F005355Metagenome / Metatranscriptome403Y
F068072Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0209648_1000101522F005355GGAGMSTLRGRSAWSYMGRVCMILPAGVMAVCGPGVAAKANNKTKPTEVPAKVIAHLPLQEAAGGEMLLQTKGDKHYLYVQKASRQGFTVIDVTKPQVPSLVNRSASSSDATAGKLELVGPDVGLAEVRDQNAKGVIRSADSPTETVKILDLSDPAHPKVLQTFTGVTSILQDPDRGLIYLANNEGLWILTHSKPGLAPAKKKRPCGSEDALASMPPDCQ
Ga0209648_100010154F068072GGAGGMLDSIDSAVDRDGTEFHGTLAAPLVLGEEVIVRSEAEVRGLLVLLRSRSHPQGFRYELLVTRLTDRGKSYVLTASLNPSFLDPGVPPSPGSKSATK
Ga0209648_100010155F004353AGGAGGMRNIGRVFFSILADLCLIGAVLALPQAATHGTAIVGWSNSEGASQEQSVSGKIASVEKNSFTLAVGQSQTSSERQNLRQDLDSPKTMTFQIDKNTTIEGSLRVGASADVTYRQEKGANVAISVHVTP
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Biomedical Sciences Research Center "Alexander Fleming"
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