NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209648_10005061

Scaffold Ga0209648_10005061


Overview

Basic Information
Taxon OID3300026551 Open in IMG/M
Scaffold IDGa0209648_10005061 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11241
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002657Metagenome / Metatranscriptome539Y
F026992Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0209648_100050616F026992N/AMNQRYTSLGKVFMRYVIRPITCLLMVLCVSLPSSTFDSPLSDEAVREAYFLGQRHDASFLAKYIKFLPPPKTGPHISSISFLTPFAQFAQFSSNYVGNYSAQQALLDHRGQPEFVKITVEIYLTNSYGALIPNPAATRFSSSPPLIPRPYEFWRDFRVQVSDGRHILSPSDSEGRPLYRCGRYGPCRPRGAAIDLEFPANAFASDSVTVEVIPPEGDTVSVDFDLTRLR
Ga0209648_100050617F002657GGAGGMLRTRVRSLAPVLAAAVLLTPSSFAFDTPLSDQAVREAYFLGQRGDETMATFLNKYTKFLEAPKTGPDIASVTVFTPFALLVQQSSQHSSGYSAQQAALDHRNQGEFVRIVIQIQLTNSYAAYIVRSTGSRSGSPNGFVPRPYDFWKDFDVQVSSKDQKLKPFSSSGQPNYLCSDDGGCEVTGATLQFDFSAEDFASGSATIDVTPPESDPISIDFDLTHLR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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