NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209648_10006566

Scaffold Ga0209648_10006566


Overview

Basic Information
Taxon OID3300026551 Open in IMG/M
Scaffold IDGa0209648_10006566 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10000
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000262Metagenome / Metatranscriptome1428Y
F028599Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0209648_100065664F000262N/AMDIDLLPRQSSHSRPSGSALHLTQKVNVRFQASLWLGSAIVLWLAAGSCKGSDYGVLQPTPEDLCKCLPIEPDIADFRHIAKHVAIPNIAAQEIGVDTVLSWAQDAFVAPDAPRTGRELQVFHIATAFVQEASVNAADCDVHFEISQTADKSAPRVIVETPVDSEYCSARQMAQAQLAKHGFRLDSQHGGELPQALPAEVLGMAFEDFDHSRGSAQVATIWELHPAIVTIP
Ga0209648_100065665F028599GAGGMVSSTLIYFNKNQEEVARVMFDENDVPGWCIKSKAEPSFKRKFAIQREACAVWLREFDPETGKLRAKSQRKELASATTHPD
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