NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209648_10017216

Scaffold Ga0209648_10017216


Overview

Basic Information
Taxon OID3300026551 Open in IMG/M
Scaffold IDGa0209648_10017216 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6304
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005419Metagenome / Metatranscriptome401Y
F026317Metagenome / Metatranscriptome198Y
F034101Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0209648_100172162F005419AGGAGGMVAAGAAGAVGQGKGPEASSPSRGPRKVRVGQGMEVQRFFLAKTGGNNGVPEFSKEVPGEPEAMMESLKTGLSYFVVSEWRGVADFSGKKPQLGREAVRSAPKAG
Ga0209648_100172165F034101N/AMPVSVSPREIHDWIEESLGQRPNIGLRKAIVNMFFVTPNPFDPRARRIPKTGFLVGTILFAASLGCFCYFNFAR
Ga0209648_100172166F026317AGCAGGMAFFVQLLELVVVLLPDPLTLGLFTLALFNLCCIAKTLHVAGTLDTDAALGISLAIGYLITIAINILSSGQAPARPTITTVVQSKSNVQQAGRESSSNTVGSQPVGHRDAVIES

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