NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209648_10027299

Scaffold Ga0209648_10027299


Overview

Basic Information
Taxon OID3300026551 Open in IMG/M
Scaffold IDGa0209648_10027299 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4991
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010607Metagenome / Metatranscriptome301N
F015844Metagenome / Metatranscriptome251N
F023559Metagenome / Metatranscriptome209N

Sequences

Protein IDFamilyRBSSequence
Ga0209648_100272991F015844N/AMLLDPVSTRRHFREKMTETMYRHAMSVAFKNWHTLALAAVLYAVNVFLLSIGNSMINTSSQSIGGWVVLVISGYLFIGAIYLVSSTLTENSTLSESFPGVIDHFRTFIVGAIAYAIGYFLLFNVAPPLQSTQTLAAAVTLIVGGAIYLVAILVAVAAAFVRPRK
Ga0209648_100272992F023559GAGGMAALKKRIPKPDLSKYDPSPLYMYTEKDSLNRVTVLKETAKEIYLIAGRYSGVEGDARVYSPLTDEEKGEIERNLRGSHKDALINHL
Ga0209648_100272994F010607AGAAGGMVKIDRYRVVARFARLFPDPAVFEDQDRLVERYLVQSGLPKGKASYLYQPEDEVNPVDDSGKPAIASGAASFRFQGKNIMAEFMPNASLTLEYYDFGTGLSPEEHSKLWKKQRIGEMSFQLRDFRHETSGLNLTNVSELYEMMKKQNQTTSLSSIELAKMPEDAFRVTVAYLKSQLRKSAEQEGLEVEVYAARELSASEKTSLEKRLTRESTGSTVYVILSKPSELMKIETR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.