Scaffold Ga0209648_10031535

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209648_10031535

Scaffold Ga0209648_10031535

Overview

Basic Information
Taxon OID	3300026551 Open in IMG/M
Scaffold ID	Ga0209648_10031535 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4623
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Laytonville, California, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009972	Metagenome / Metatranscriptome	310	N
F068642	Metagenome	124	Y
F078275	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_100315352	F078275	AGGAG	VAELERHQDRESWVSWAIEFVRRGLWPADVITVHGPRASSADRCWGEAEAWDESGTWSYTVAFQTPARHGWDRRGVRLWDAEHPGTHFPVVRGSAMSHAQRRWLRIARRLAGTQWQTSGR
Ga0209648_100315353	F068642	GAGG	MRTRSAHEVPEALRSHNKGQHRDPQEVVSNLDRRIRVIVLWRQRDDDPEQWTYLERMLPGEFSYEIVKQRWGGGAYRIRLFGAWDRTRRQEKYITHVAFWIRQGFPPHARTSGAAGPGEKRADANLITPR
Ga0209648_100315355	F009972	N/A	MPESSLRFRLVIACAADSTPGDVSGTVRRLHTDTELFWLLSIARPVVAAPKVCRRSVATCLALLMLDDHLRVLRVLPKASVPHTPATGVLRRDGVIQTYLGGVLPPRALADTKRIAELLINGHASYLDTLCQALSGDETSDGFEAVPADHELYDPEAEQYFAPSPPFQAVRPWGHLPATRGQ

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