NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209648_10061439

Scaffold Ga0209648_10061439


Overview

Basic Information
Taxon OID3300026551 Open in IMG/M
Scaffold IDGa0209648_10061439 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3185
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000217Metagenome / Metatranscriptome1557Y
F000440Metagenome / Metatranscriptome1137Y
F030676Metagenome184Y

Sequences

Protein IDFamilyRBSSequence
Ga0209648_100614394F000440N/AMRMQTKCTPAQRAAEYLKRVAALTGAEQVRDDSYWLKAGRRNFLVDYKFVRLISPDGKSTCFSVAADPDMPSAEVVASALLQLKNNPRLFKKWRKQRGYTFKANGKMFGDAYQLIRDET
Ga0209648_100614395F030676N/AMVSATLSLTAFFALIAWRFVFTGLRHRPLAREIAAPQQQHTNVLEQGLHILDLARVAVIPDYRFESGSDGVQPTTPKDRAKTYLRRIVALTGATQMGNGYDINVGTTRFHVRDRYVSRMRDVTDPKCAYEETCFYSADKDMPKAEQISTALLQLKNNAALFDRWAAQSGAFKADGQAFSPAQ
Ga0209648_100614396F000217AGGAGMTAKILTFSSHGDTTLLEYDPATADMEEVNKVIAEYEAKTGAQPFDMATGERLEKVTREQNEVLMVHPIAGG
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Institute for Fundamental Biomedical Research
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